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'''Welcome to Molmil wiki!''' | '''Welcome to Molmil wiki!''' | ||
==Introduction== | ==Introduction== <!--T:2--> | ||
'''Molmil''' is a new molecular viewer developed for a web environment with the intent to be usable on as many platforms as possible, while offering GPU hardware acceleration via OpenGL, offering stunning graphics and optimal performance. Not only do we integrate the molmil viewer into our existing services we offer like we do with jV, molmil is also available as a [https://pdbj.org/molmil/ standalone viewer]. Via the standalone viewer you can load your own PDB, PDBML PDBx/mmCIF, mmJSON files, but also load existing PDB entries (via PDB ID) and chem_comp entries (via chem_comp id). Finally it is also possible to load [https://pdbj.org/help/polygon-files polygon-xml files]. In the future we will add additional features and feature requests are of course also appreciated. It is also possible to integrate molmil on your [https://pdbj.org/help/integrate-molmil own website]. | <!--T:3--> | ||
'''Molmil''' is a new molecular viewer developed by [https://github.com/gjbekker Gert-Jan Bekker] of [https://pdbj.org/ PDBj]. | |||
It is for a web environment with the intent to be usable on as many platforms as possible, while offering GPU hardware acceleration via OpenGL, offering stunning graphics and optimal performance. Not only do we integrate the molmil viewer into our existing services we offer like we do with [https://pdbj.org/jv/ jV], molmil is also available as a [https://pdbj.org/molmil/ standalone viewer]. Via the standalone viewer you can load your own PDB, PDBML PDBx/mmCIF, mmJSON files, but also load existing PDB entries (via PDB ID) and chem_comp entries (via chem_comp id). Finally it is also possible to load [https://pdbj.org/help/polygon-files polygon-xml files]. In the future we will add additional features and feature requests are of course also appreciated. It is also possible to integrate molmil on your [https://pdbj.org/help/integrate-molmil own website]. | |||
==How to Use== | ==How to Use== <!--T:4--> | ||
* [[Basical Operation]]: File open, rotate, translate, change displaying style, etc. | |||
* [[Left Menu]]: File operation both opening and exporting, global displaying settings, etc. | |||
* [[Right Menu]]: Display style settings for each chain, etc. | |||
* [[Commands]]: Operation commands. | |||
See also the following pages for usage of Molmil. | |||
* [https://pdbj.org/help/molmil-manual Molmil User Manual] | * [https://pdbj.org/help/molmil-manual Molmil User Manual] | ||
* [https://github.com/gjbekker/molmil/wiki/Molmil-usage Molmil usage]（GitHub） | * [https://github.com/gjbekker/molmil/wiki/Molmil-usage Molmil usage]（GitHub） | ||
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* [https://github.com/gjbekker/molmil/wiki/FAQ Molmil FAQ]（GitHub） | * [https://github.com/gjbekker/molmil/wiki/FAQ Molmil FAQ]（GitHub） | ||
==Support== | ==Support== <!--T:5--> | ||
On desktops, laptops and workstations, to use molmil, it is recommended to install the latest version of your favourite browser. For some older versions of Safari and Opera it is also required to [http://www.khronos.org/webgl/wiki/Getting_a_WebGL_Implementation enable WebGL]. Finally make sure that your drivers are not too old (2010-12-31). | On desktops, laptops and workstations, to use molmil, it is recommended to install the latest version of your favourite browser. For some older versions of Safari and Opera it is also required to [http://www.khronos.org/webgl/wiki/Getting_a_WebGL_Implementation enable WebGL]. Finally make sure that your drivers are not too old (2010-12-31). | ||
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On mobile devices (smartphones/tablets), it is recommended to install the latest version of Chrome for Android, Firefox for Andriod, Opera Mobile or the Blackberry browser. iOS (iPhone/iPad) is currently supported from iOS 8.0. In case your browser supports WebGL, you will be able to see and use a preview of our new molmil viewer: | On mobile devices (smartphones/tablets), it is recommended to install the latest version of Chrome for Android, Firefox for Andriod, Opera Mobile or the Blackberry browser. iOS (iPhone/iPad) is currently supported from iOS 8.0. In case your browser supports WebGL, you will be able to see and use a preview of our new molmil viewer: | ||
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<iframe key="pdbj" path="/molmildoc/src/sample1.html" width="650" height="450"/> | |||
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==Trouble Shooting== | ==Trouble Shooting== <!--T:7--> | ||
* [https://pdbj.org/help/faq_molmil01 Molmil viewer no longer works.] | * [https://pdbj.org/help/faq_molmil01 Molmil viewer no longer works.] | ||
* [https://pdbj.org/help/faq_molmil02 The OS crashes when the Enable button on the Molmil page is clicked.] | * [https://pdbj.org/help/faq_molmil02 The OS crashes when the Enable button on the Molmil page is clicked.] | ||
* [https://pdbj.org/help/faq_molmil03 Links to Molmil viewer do not appear. / Molmil does not work.] | * [https://pdbj.org/help/faq_molmil03 Links to Molmil viewer do not appear. / Molmil does not work.] | ||
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Latest revision as of 02:14, 5 June 2023
Welcome to Molmil wiki!
Introduction
Molmil is a new molecular viewer developed by Gert-Jan Bekker of PDBj. It is for a web environment with the intent to be usable on as many platforms as possible, while offering GPU hardware acceleration via OpenGL, offering stunning graphics and optimal performance. Not only do we integrate the molmil viewer into our existing services we offer like we do with jV, molmil is also available as a standalone viewer. Via the standalone viewer you can load your own PDB, PDBML PDBx/mmCIF, mmJSON files, but also load existing PDB entries (via PDB ID) and chem_comp entries (via chem_comp id). Finally it is also possible to load polygon-xml files. In the future we will add additional features and feature requests are of course also appreciated. It is also possible to integrate molmil on your own website.
How to Use
- Basical Operation: File open, rotate, translate, change displaying style, etc.
- Left Menu: File operation both opening and exporting, global displaying settings, etc.
- Right Menu: Display style settings for each chain, etc.
- Commands: Operation commands.
See also the following pages for usage of Molmil.
- Molmil User Manual
- Molmil usage（GitHub）
- Integrate Molmil（GitHub）
- Molmil API（GitHub）
- Molmil FAQ（GitHub）
Support
On desktops, laptops and workstations, to use molmil, it is recommended to install the latest version of your favourite browser. For some older versions of Safari and Opera it is also required to enable WebGL. Finally make sure that your drivers are not too old (2010-12-31).
On mobile devices (smartphones/tablets), it is recommended to install the latest version of Chrome for Android, Firefox for Andriod, Opera Mobile or the Blackberry browser. iOS (iPhone/iPad) is currently supported from iOS 8.0. In case your browser supports WebGL, you will be able to see and use a preview of our new molmil viewer: